Peer Reviewed Publications

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Erin Ostrem, Matthew F. Warren, Gabriel Contreras, Hailey Bussan, Mallikarjun Jillella, Jessamine Kuehn, Ruben Aquino Martinez, Eugenio Vivas, Federico Rey, Ophelia S. Venturelli. Dietary Fiber and Host-Derived Glycans Shape Butyrate Production through Modulation of Interspecies Interactions. Manuscript in preparation. 

Banka, N., Erin M. Ostrem, Ophelia S. Venturelli, Romero, P. ML-aided engineering of BmoR for butyrate detection. Manuscript in preparation. 

Nick Quinn-Bohmann, Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W. Lampe, Thomas Gurry, Noa Rappaport, Erin M. Ostrem, Ophelia S. Venturelli, Christian Diener, Sean M. Gibbons. Microbial community-scale metabolic modeling predicts personalized short chain fatty acid production profiles in the human gut. Nature Microbiology 9, 1700–1712 (2024).

Ostrem Loss, EM, Thompson, J., Cheung, K. P., Qian, Y. & Venturelli, O. S. Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations. Nature Ecology and Evolution, Nat Ecol Evol 7, 127–142 (2023).

Ostrem Loss EM  Lee MK,  Wu MY,  Martien J,  Chen W , Amador-Noguez D, Jefcoate C, Remucal C, Jung SH, Kim SC & Yu JH. (2019). Cytochrome P450 Monooxygenase-Mediated Metabolic Utilization of Benzo[ a ]Pyrene by Aspergillus Species. mBio. 10, e00558-19.

Ostrem Loss EM and Yu J. (2018), Bioremediation and microbial metabolism of benzo(a)pyrene. Molecular Microbiology, 109: 433-444.

Wu M-Y, Mead ME, Lee M-K, Ostrem Loss EM, Kim S-C, Rokas A, Yu J-H. (2018). Systematic dissection of the evolutionarily conserved WetA developmental regulator across a genus of filamentous fungi. mBio 9:e01130-18.

Fuja, Tannin J., Ostrem, Erin M., Probst-Fuja, Megan N., Titze, Ingo R. “Differential Cell Adhesion to Vocal Fold Extracellular Matrix Constituents.” Matrix Biology 25 (2006) 240-251.